Xin Dong

Xin Dong

PhD Candidate at Tongji University.

Publications

[Google Scholar] [Research Gate] [ORCID] [PubMed Bibliography]

Asterisk (*) denotes the Co-first Authors and Hashtag (#) denotes the Corresponding Authors.

  • Ren,P.*, Shi,X.*, Yu,Z., Dong,X., Ding,X., Wang,J., Sun,L., Yan,Y., Hu,J., Zhang,P., Chen,Q., Zhang,J., Li,T., Wang,C.# (2023) Single-cell assignment using multiple-adversarial domain adaptation network with large-scale references. Cell Reports Methods, 3, 100577 [Web] [Abstract]

  • Han,Y.*, Wang,Y.*, Dong,X.*, Sun,D., Liu,Z., Yue,J., Wang,H., Li,T.#, Wang,C.# (2022) TISCH2: expanded datasets and new tools for single-cell transcriptome analyses of the tumor microenvironment. Nucleic Acids Research, 51, D1029-D1037. [Web] [Abstract] [PDF]

  • Shi, X.*, Yu,Z.*, Ren,P., Dong,X., Ding,X., Song,J., Zhang,J., Li,T.#, Wang,C.# (2022) HUSCH: an integrated single-cell transcriptome atlas for human tissue gene expression visualization and analyses. Nucleic Acids Research, 51, D1425-D1431. [Web] [Abstract] [PDF]

  • Dong,X.*, Tang,K.*, Xu,Y., Wei,H., Han,T., Wang,C. # (2022) Single-cell gene regulation network inference by large-scale data integration. Nucleic Acids Research, 50, e126. [Web] [Abstract] [PDF]

  • Xu,R.*, Li,S.*, Wu,Q.*, Li,C.*, Jiang,M.*, Guo,L., Chen,M., Yang,L., Dong,X., Wang,H., Wang,C. #, Liu,X.#, Ou,X.#, Gao,S.# (2022) Stage-specific H3K9me3 occupancy ensures retrotransposon silencing in human pre-implantation embryos. Cell Stem Cell, 29, 1051-1066.e8. [Web] [Abstract]

  • Sun,D.*, Wang,J.*, Han,Y.*, Dong,X., Ge,J., Zheng,R., Shi,X., Wang,B., Li,Z., Ren,P., Sun,L., Yan,Y., Zhang,P., Zhang,F.#, Li,T.#, Wang,C.# (2021) TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment. Nucleic Acids Research, 49, D1420-D1430. [Web] [Abstract] [PDF]

  • Zheng,R.*, Dong,X.*, Wan,C., Shi,X., Zhang,X.# and Meyer,C.A.# (2020) Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data. Quantitative Biology, 8, 267-276. [Web][PDF]

  • Chen,C.-H., Zheng,R., Tokheim,C., Dong,X., Fan,J., Wan,C., Tang,Q., Brown,M., Liu,J.S., Meyer,C.A. #, Liu,X.S.# (2020) Determinants of transcription factor regulatory range. Nature Communications, 11, 2472. [Web] [Abstract] [PDF]

  • Li,S.*, Wan,C.*, Zheng,R., Fan,J., Dong,X., Meyer,C.A.# and Liu,X.S.# (2019) Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks. Nucleic Acids Research, 47, W206–W211. [Web][Abstract][PDF]